Multi-scale sequential feature selection for disease classification using Raman spectroscopy data.

Raman spectroscopy (RS) optical technology promises non-destructive and fast application in medical disease diagnosis in a single step. However, achieving clinically relevant performance levels remains challenging due to the inability to search for significant Raman signals at different scales. Here we propose a multi-scale sequential feature selection method that can capture global sequential features and local peak features for disease classification using RS data. Specifically, we utilize the Long short-term memory network (LSTM) module to extract global sequential features in the Raman spectra, as it can capture long-term dependencies present in the Raman spectral sequences. Meanwhile, the attention mechanism is employed to select local peak features that were ignored before and are the key to distinguishing different diseases. Experimental results on three public and in-house datasets demonstrate the superiority of our model compared with state-of-the-art methods for RS classification. In particular, our model achieves an accuracy of 97.9 ± 0.2% on the COVID-19 dataset, 76.3 ± 0.4% on the H-IV dataset, and 96.8 ± 1.9% on the H-V dataset.

HRL4EC: Hierarchical reinforcement learning for multi-mode epidemic control.

Infectious diseases, such as Black Death, Spanish Flu, and COVID-19, have accompanied human history and threatened public health, resulting in enormous infections and even deaths among citizens. Because of their rapid development and huge impact, laying out interventions becomes one of the most critical paths for policymakers to respond to the epidemic. However, the existing studies mainly focus on epidemic control with a single intervention, which makes the epidemic control effectiveness severely compromised. In view of this, we propose a Hierarchical Reinforcement Learning decision framework for multi-mode Epidemic Control with multiple interventions called HRL4EC. We devise an epidemiological model, referred to as MID-SEIR, to describe multiple interventions' impact on transmission explicitly, and use it as the environment for HRL4EC. Besides, to address the complexity introduced by multiple interventions, this work transforms the multi-mode intervention decision problem into a multi-level control problem, and employs hierarchical reinforcement learning to find the optimal strategies. Finally, extensive experiments are conducted with real and simulated epidemic data to validate the effectiveness of our proposed method. We further analyze the experiment data in-depth, conclude a series of findings on epidemic intervention strategies, and make a visualization accordingly, which can provide heuristic support for policymakers' pandemic response.

Geographical clusters of dengue outbreak in Singapore during the Covid-19 nationwide lockdown of 2020.

Dengue, a mosquito-transmitted viral disease, has posed a public health challenge to Singaporean residents over the years. In 2020, Singapore experienced an unprecedented dengue outbreak. We collected a dataset of geographical dengue clusters reported by the National Environment Agency (NEA) from 15 February to 9 July in 2020, covering the nationwide lockdown associated with Covid-19 during the period from 7 April to 1 June. NEA regularly updates the dengue clusters during which an infected person may be tagged to one cluster based on the most probable infection location (residential apartment or workplace address), which is further matched to fine-grained spatial units with an average coverage of about 1.35 km2. Such dengue cluster dataset helps not only reveal the dengue transmission patterns, but also reflect the effects of lockdown on dengue spreading dynamics. The resulting data records are released in simple formats for easy access to facilitate studies on dengue epidemics.